Hey Matt,
First type "cf disable" to turn off cluster fail over.
Use a serial cable to plug into the back of the NetApp and type in "halt" (or if you have SP, BMC, RLM configured you can use this)
You can also SSH into it, but you can't watch the whole shutdown sequence occur as you will disconnected before it fully shuts down.
After both controllers have been halted you can power everything down.
When you're ready to start it back up, turn all the shelves on, wait until all shelves boot up (I wait about 2 minutes) then turn on the controllers.
You MUST use your serial cable, SP, BMC, or RLM in order to boot it back up, you do this by typing "boot_ontap" on each controller.
Let us know if you have any other questions!